HL_7MPI_062

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

7MPI|1|A1|U|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_062 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1694

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7MPI|1|A1|C|2840
7MPI|1|A1|G|2841
7MPI|1|A1|U|2842
7MPI|1|A1|U|2843
7MPI|1|A1|C|2844
7MPI|1|A1|A|2845
7MPI|1|A1|U|2846
7MPI|1|A1|A|2847
7MPI|1|A1|G|2848

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AI

60S ribosomal protein L10

Chain Am

60S ribosomal protein L40-A