HL_7MPI_103

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAC(3AU)CAACAC

Length

10 nucleotides

Bulged bases

7MPI|1|B5|A|1196

QA status

Modified nucleotides: 3AU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_103 not in the Motif Atlas

Geometric match to HL_4V88_212

Geometric discrepancy: 0.1448

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7MPI|1|B5|G|1188
7MPI|1|B5|A|1189
7MPI|1|B5|C|1190
7MPI|1|B5|3AU|1191
7MPI|1|B5|C|1192
7MPI|1|B5|A|1193
7MPI|1|B5|A|1194
7MPI|1|B5|C|1195
7MPI|1|B5|A|1196
7MPI|1|B5|C|1197

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

40S ribosomal protein S16-A

Chain BU

40S ribosomal protein S20

Chain Bd

40S ribosomal protein S29-A

Chain Bh

Suppressor protein STM1