HL_7MPI_104

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7MPI|1|B5|G|1243, 7MPI|1|B5|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_104 not in the Motif Atlas

Geometric match to HL_4V88_213

Geometric discrepancy: 0.2115

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7MPI|1|B5|A|1238
7MPI|1|B5|U|1239
7MPI|1|B5|U|1240
7MPI|1|B5|G|1241
7MPI|1|B5|A|1242
7MPI|1|B5|G|1243
7MPI|1|B5|A|1244
7MPI|1|B5|G|1245
7MPI|1|B5|C|1246
7MPI|1|B5|U|1247

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BP

40S ribosomal protein S15

Chain Bd

40S ribosomal protein S29-A

Chain Bf

40S ribosomal protein S31