HL_7MPI_115

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

(A2M)CGUGCAAAU

Length

10 nucleotides

Bulged bases

7MPI|1|A1|U|879, 7MPI|1|A1|A|883, 7MPI|1|A1|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPI_115 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0769

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7MPI|1|A1|A2M|876
7MPI|1|A1|C|877
7MPI|1|A1|G|878
7MPI|1|A1|U|879
7MPI|1|A1|G|880
7MPI|1|A1|C|881
7MPI|1|A1|A|882
7MPI|1|A1|A|883
7MPI|1|A1|A|884
7MPI|1|A1|U|885

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AP

60S ribosomal protein L17-A

Chain Aj

60S ribosomal protein L37-A