HL_7MQ8_023

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7MQ8|1|L1|U|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ8_023 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1748

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7MQ8|1|L1|G|1366
7MQ8|1|L1|U|1367
7MQ8|1|L1|U|1368
7MQ8|1|L1|A|1369
7MQ8|1|L1|A|1370
7MQ8|1|L1|U|1371
7MQ8|1|L1|U|1372
7MQ8|1|L1|C|1373

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NR

RRP12-like protein