HL_7MQ9_022

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7MQ9|1|L1|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQ9_022 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3104

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7MQ9|1|L1|A|1295
7MQ9|1|L1|U|1296
7MQ9|1|L1|U|1297
7MQ9|1|L1|G|1298
7MQ9|1|L1|A|1299
7MQ9|1|L1|U|1300
7MQ9|1|L1|A|1301
7MQ9|1|L1|G|1302
7MQ9|1|L1|C|1303
7MQ9|1|L1|U|1304

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NT

Ubiquitin-40S ribosomal protein S27a

Chain SZ

Bystin