HL_7MSM_048

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

7MSM|1|A|A|2014, 7MSM|1|A|C|2015, 7MSM|1|A|U|2016, 7MSM|1|A|A|2020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MSM_048 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0952

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7MSM|1|A|U|2011
7MSM|1|A|U|2012
7MSM|1|A|U|2013
7MSM|1|A|A|2014
7MSM|1|A|C|2015
7MSM|1|A|U|2016
7MSM|1|A|A|2017
7MSM|1|A|A|2018
7MSM|1|A|A|2019
7MSM|1|A|A|2020
7MSM|1|A|A|2021

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2