HL_7NAC_015

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NAC_015 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.374

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7NAC|1|1|U|640
7NAC|1|1|C|641
7NAC|1|1|U|642
7NAC|1|1|U|643
7NAC|1|1|G|644
7NAC|1|1|A|645
7NAC|1|1|A|646
7NAC|1|1|A|647
7NAC|1|1|C|648
7NAC|1|1|A|649

Current chains

Chain 1

25S rRNA

Nearby chains

Chain e

60S ribosomal protein L32

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase