HL_7NRD_020

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7NRD|1|LA|U|879, 7NRD|1|LA|A|883, 7NRD|1|LA|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.1751

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7NRD|1|LA|A|876
7NRD|1|LA|C|877
7NRD|1|LA|G|878
7NRD|1|LA|U|879
7NRD|1|LA|G|880
7NRD|1|LA|C|881
7NRD|1|LA|A|882
7NRD|1|LA|A|883
7NRD|1|LA|A|884
7NRD|1|LA|U|885

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein L17-A

Chain Ll

60S ribosomal protein L37-A