3D structure

PDB id
7NRD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
4.36 Å

Loop

Sequence
GUGAACAGC
Length
9 nucleotides
Bulged bases
7NRD|1|LA|C|1866
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7NRD_042 not in the Motif Atlas
Geometric match to HL_4V9F_032
Geometric discrepancy: 0.2805
The information below is about HL_4V9F_032
Detailed Annotation
Anticodon loop related
Broad Annotation
Anticodon loop related
Motif group
HL_77082.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
8

Unit IDs

7NRD|1|LA|G|1861
7NRD|1|LA|U|1862
7NRD|1|LA|G|1863
7NRD|1|LA|A|1864
7NRD|1|LA|A|1865
7NRD|1|LA|C|1866
7NRD|1|LA|A|1867
7NRD|1|LA|G|1868
7NRD|1|LA|C|1869

Current chains

Chain LA
25S rRNA (3184-MER)

Nearby chains

Chain LT
60S ribosomal protein L19-A

Coloring options:


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