HL_7NRD_042
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- GUGAACAGC
- Length
- 9 nucleotides
- Bulged bases
- 7NRD|1|LA|C|1866
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_042 not in the Motif Atlas
- Geometric match to HL_4V9F_032
- Geometric discrepancy: 0.2805
- The information below is about HL_4V9F_032
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
7NRD|1|LA|G|1861
7NRD|1|LA|U|1862
7NRD|1|LA|G|1863
7NRD|1|LA|A|1864
7NRD|1|LA|A|1865
7NRD|1|LA|C|1866
7NRD|1|LA|A|1867
7NRD|1|LA|G|1868
7NRD|1|LA|C|1869
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
Coloring options: