HL_7NRD_046
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 7NRD|1|LA|A|2138, 7NRD|1|LA|A|2139, 7NRD|1|LA|U|2140, 7NRD|1|LA|A|2144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_046 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.2035
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
7NRD|1|LA|U|2135
7NRD|1|LA|C|2136
7NRD|1|LA|U|2137
7NRD|1|LA|A|2138
7NRD|1|LA|A|2139
7NRD|1|LA|U|2140
7NRD|1|LA|U|2141
7NRD|1|LA|A|2142
7NRD|1|LA|A|2143
7NRD|1|LA|A|2144
7NRD|1|LA|A|2145
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain Ll
- 60S ribosomal protein L37-A
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