HL_7NRD_056
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 7NRD|1|LA|A|2637, 7NRD|1|LA|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_056 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.1459
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
7NRD|1|LA|U|2633
7NRD|1|LA|U|2634
7NRD|1|LA|A|2635
7NRD|1|LA|A|2636
7NRD|1|LA|A|2637
7NRD|1|LA|C|2638
7NRD|1|LA|G|2639
7NRD|1|LA|A|2640
7NRD|1|LA|U|2641
7NRD|1|LA|A|2642
7NRD|1|LA|A|2643
7NRD|1|LA|C|2644
7NRD|1|LA|G|2645
Current chains
- Chain LA
- 25S rRNA (3184-MER)
Nearby chains
- Chain LB
- 5S ribosomal RNA; 5S rRNA
- Chain LL
- 60S ribosomal protein L10
- Chain LV
- 60S ribosomal protein L21-A
- Chain Ld
- 60S ribosomal protein L29
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