HL_7NRD_063

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7NRD|1|LA|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_063 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.2166

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7NRD|1|LA|A|2897
7NRD|1|LA|G|2898
7NRD|1|LA|C|2899
7NRD|1|LA|A|2900
7NRD|1|LA|G|2901
7NRD|1|LA|A|2902
7NRD|1|LA|A|2903
7NRD|1|LA|U|2904

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain Lo

Ubiquitin-60S ribosomal protein L40