HL_7NRD_086

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7NRD|1|S2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_086 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.137

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7NRD|1|S2|G|330
7NRD|1|S2|A|331
7NRD|1|S2|U|332
7NRD|1|S2|A|333
7NRD|1|S2|G|334
7NRD|1|S2|U|335
7NRD|1|S2|G|336
7NRD|1|S2|G|337
7NRD|1|S2|C|338

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SV

40S ribosomal protein S8-A

Chain SX

40S ribosomal protein S11-A