HL_7NRD_105
3D structure
- PDB id
- 7NRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.36 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 7NRD|1|S2|G|1243
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7NRD_105 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.2876
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
7NRD|1|S2|A|1238
7NRD|1|S2|U|1239
7NRD|1|S2|U|1240
7NRD|1|S2|G|1241
7NRD|1|S2|A|1242
7NRD|1|S2|G|1243
7NRD|1|S2|A|1244
7NRD|1|S2|G|1245
7NRD|1|S2|C|1246
7NRD|1|S2|U|1247
Current chains
- Chain S2
- TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence
Nearby chains
- Chain SE
- 40S ribosomal protein S15
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- Ubiquitin-40S ribosomal protein S31
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