HL_7NRD_107

3D structure

PDB id

7NRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.36 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

7NRD|1|S2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NRD_107 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1763

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7NRD|1|S2|C|1309
7NRD|1|S2|U|1310
7NRD|1|S2|U|1311
7NRD|1|S2|A|1312
7NRD|1|S2|A|1313
7NRD|1|S2|U|1314
7NRD|1|S2|U|1315
7NRD|1|S2|G|1316

Current chains

Chain S2

TPA_inf: Saccharomyces cerevisiae S288C chromosome XII, complete sequence

Nearby chains

Chain SG

40S ribosomal protein S17-B