HL_7NWG_040

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCGCGAGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_040 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3396

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

7NWG|1|51|G|2559
7NWG|1|51|C|2560
7NWG|1|51|C|2561
7NWG|1|51|G|2562
7NWG|1|51|C|2563
7NWG|1|51|G|2564
7NWG|1|51|A|2565
7NWG|1|51|G|2566
7NWG|1|51|G|2567
7NWG|1|51|C|2568

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains