HL_7NWG_044

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

7NWG|1|51|C|2709, 7NWG|1|51|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_044 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3944

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

7NWG|1|51|C|2704
7NWG|1|51|G|2705
7NWG|1|51|G|2706
7NWG|1|51|U|2707
7NWG|1|51|U|2708
7NWG|1|51|C|2709
7NWG|1|51|C|2710
7NWG|1|51|G|2711
7NWG|1|51|G|2712

Current chains

Chain 51

28S Ribosomal RNA

Nearby chains

Chain R3

60S ribosomal protein L19

Chain U3

L22

Chain X3

uL23