HL_7NWG_108

3D structure

PDB id

7NWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7NWG|1|A2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7NWG_108 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2251

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7NWG|1|A2|G|1366
7NWG|1|A2|U|1367
7NWG|1|A2|U|1368
7NWG|1|A2|A|1369
7NWG|1|A2|A|1370
7NWG|1|A2|U|1371
7NWG|1|A2|U|1372
7NWG|1|A2|C|1373

Current chains

Chain A2

18S Ribosomal RNA

Nearby chains

Chain S2

40S ribosomal protein S17