HL_7O80_017

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_017 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.5996

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7O80|1|A2|U|886
7O80|1|A2|A|887
7O80|1|A2|U|888
7O80|1|A2|U|889
7O80|1|A2|U|890
7O80|1|A2|U|891
7O80|1|A2|G|892
7O80|1|A2|U|893
7O80|1|A2|U|894
7O80|1|A2|G|895
7O80|1|A2|G|896
7O80|1|A2|U|897
7O80|1|A2|U|898
7O80|1|A2|U|899
7O80|1|A2|U|900
7O80|1|A2|C|901
7O80|1|A2|G|902

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ak

40S ribosomal protein S11