HL_7O80_093
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 7O80|1|B5|U|3534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O80_093 not in the Motif Atlas
- Homologous match to HL_8C3A_050
- Geometric discrepancy: 0.097
- The information below is about HL_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
7O80|1|B5|U|3528
7O80|1|B5|C|3529
7O80|1|B5|U|3530
7O80|1|B5|A|3531
7O80|1|B5|A|3532
7O80|1|B5|U|3533
7O80|1|B5|U|3534
7O80|1|B5|A|3535
7O80|1|B5|G|3536
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BV
- Ribosomal protein L23
- Chain By
- Eukaryotic peptide chain release factor subunit 1
Coloring options: