3D structure

PDB id
7OBR (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC-SRP early complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
ACGUGCAAAU
Length
10 nucleotides
Bulged bases
7OBR|1|5|U|1596, 7OBR|1|5|A|1600, 7OBR|1|5|A|1601
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OBR_026 not in the Motif Atlas
Homologous match to HL_8C3A_020
Geometric discrepancy: 0.0913
The information below is about HL_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.8
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

7OBR|1|5|A|1593
7OBR|1|5|C|1594
7OBR|1|5|G|1595
7OBR|1|5|U|1596
7OBR|1|5|G|1597
7OBR|1|5|C|1598
7OBR|1|5|A|1599
7OBR|1|5|A|1600
7OBR|1|5|A|1601
7OBR|1|5|U|1602

Current chains

Chain 5
28S rRNA

Nearby chains

Chain B
uL3
Chain P
uL22
Chain j
Ribosomal protein L37
Chain s
Dipeptidyl aminopeptidase B

Coloring options:


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