HL_7OHT_007

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGUAAAC

Length

8 nucleotides

Bulged bases

7OHT|1|1|U|689

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHT_007 not in the Motif Atlas

Homologous match to HL_8C3A_015

Geometric discrepancy: 0.4443

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OHT|1|1|G|686
7OHT|1|1|U|687
7OHT|1|1|G|688
7OHT|1|1|U|689
7OHT|1|1|A|690
7OHT|1|1|A|692
7OHT|1|1|A|693
7OHT|1|1|C|694

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A