HL_7OHU_013

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

7OHU|1|1|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHU_013 not in the Motif Atlas

Geometric match to HL_4V88_190

Geometric discrepancy: 0.385

The information below is about HL_4V88_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91015.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

7OHU|1|1|G|542
7OHU|1|1|C|543
7OHU|1|1|C|544
7OHU|1|1|U|545
7OHU|1|1|C|546
7OHU|1|1|G|547
7OHU|1|1|G|548
7OHU|1|1|U|549

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A