HL_7OHU_018

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAGGAUG

Length

9 nucleotides

Bulged bases

7OHU|1|1|G|769

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHU_018 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3997

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7OHU|1|1|C|758
7OHU|1|1|U|759
7OHU|1|1|G|760
7OHU|1|1|A|761
7OHU|1|1|G|769
7OHU|1|1|G|770
7OHU|1|1|A|771
7OHU|1|1|U|772
7OHU|1|1|G|773

Current chains

Chain 1

25S rRNA

Nearby chains