HL_7OHU_040
3D structure
- PDB id
- 7OHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 7OHU|1|2|U|82, 7OHU|1|2|C|84, 7OHU|1|2|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OHU_040 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.5423
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7OHU|1|2|U|69
7OHU|1|2|G|70
7OHU|1|2|A|71
7OHU|1|2|A|72
7OHU|1|2|U|73
7OHU|1|2|U|74
7OHU|1|2|G|75
7OHU|1|2|C|76
7OHU|1|2|A|77
7OHU|1|2|G|78
7OHU|1|2|A|79
7OHU|1|2|A|80
7OHU|1|2|U|81
7OHU|1|2|U|82
7OHU|1|2|C|83
7OHU|1|2|C|84
7OHU|1|2|G|85
7OHU|1|2|U|86
7OHU|1|2|G|87
7OHU|1|2|A|88
7OHU|1|2|A|89
Current chains
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: