HL_7OHW_016
3D structure
- PDB id
- 7OHW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 7OHW|1|1|U|689, 7OHW|1|1|A|690, 7OHW|1|1|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OHW_016 not in the Motif Atlas
- Homologous match to HL_8C3A_015
- Geometric discrepancy: 0.2627
- The information below is about HL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7OHW|1|1|G|686
7OHW|1|1|U|687
7OHW|1|1|G|688
7OHW|1|1|U|689
7OHW|1|1|A|690
7OHW|1|1|A|691
7OHW|1|1|A|692
7OHW|1|1|A|693
7OHW|1|1|C|694
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain v
- Nucleolar protein 16
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