HL_7OHX_015

3D structure

PDB id

7OHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHX_015 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.3562

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OHX|1|1|U|640
7OHX|1|1|C|641
7OHX|1|1|U|642
7OHX|1|1|U|643
7OHX|1|1|G|644
7OHX|1|1|A|645
7OHX|1|1|A|646
7OHX|1|1|A|647
7OHX|1|1|C|648
7OHX|1|1|A|649

Current chains

Chain 1

25S rRNA

Nearby chains

Chain e

60S ribosomal protein L32