HL_7OI6_024

3D structure

PDB id

7OI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUUCACCAG

Length

9 nucleotides

Bulged bases

7OI6|1|A|U|1194, 7OI6|1|A|C|1195

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OI6_024 not in the Motif Atlas

Geometric match to HL_5J8B_119

Geometric discrepancy: 0.3694

The information below is about HL_5J8B_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OI6|1|A|C|1192
7OI6|1|A|U|1193
7OI6|1|A|U|1194
7OI6|1|A|C|1195
7OI6|1|A|A|1196
7OI6|1|A|C|1197
7OI6|1|A|C|1198
7OI6|1|A|A|1199
7OI6|1|A|G|1200

Current chains

Chain A

16S rRNA

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1