HL_7OOD_005

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAUAAAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_005 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.2232

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7OOD|1|3|U|161
7OOD|1|3|G|162
7OOD|1|3|A|163
7OOD|1|3|A|164
7OOD|1|3|U|165
7OOD|1|3|A|166
7OOD|1|3|A|167
7OOD|1|3|A|168
7OOD|1|3|U|169
7OOD|1|3|A|170
7OOD|1|3|G|171

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28