HL_7OOD_045

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUAACUAAAA

Length

11 nucleotides

Bulged bases

7OOD|1|3|A|1787, 7OOD|1|3|A|1788, 7OOD|1|3|C|1789, 7OOD|1|3|A|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_045 not in the Motif Atlas

Geometric match to HL_5TBW_046

Geometric discrepancy: 0.1663

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7OOD|1|3|U|1784
7OOD|1|3|U|1785
7OOD|1|3|U|1786
7OOD|1|3|A|1787
7OOD|1|3|A|1788
7OOD|1|3|C|1789
7OOD|1|3|U|1790
7OOD|1|3|A|1791
7OOD|1|3|A|1792
7OOD|1|3|A|1793
7OOD|1|3|A|1794

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain a

50S ribosomal protein L2

Chain r

50S ribosomal protein L22