3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AAUGUAAAUACCU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OSA_013 not in the Motif Atlas
Homologous match to HL_8P9A_203
Geometric discrepancy: 0.1052
The information below is about HL_8P9A_203
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05304.3
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7OSA|1|18S|A|520
7OSA|1|18S|A|521
7OSA|1|18S|U|522
7OSA|1|18S|G|523
7OSA|1|18S|U|524
7OSA|1|18S|A|525
7OSA|1|18S|A|526
7OSA|1|18S|A|527
7OSA|1|18S|U|528
7OSA|1|18S|A|529
7OSA|1|18S|C|530
7OSA|1|18S|C|531
7OSA|1|18S|U|532

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS24
40S ribosomal protein S24
Chain eS4
40S ribosomal protein S4
Chain uS4
BJ4_G0026100.mRNA.1.CDS.1

Coloring options:


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