HL_7OSA_013

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSA_013 not in the Motif Atlas

Homologous match to HL_8P9A_203

Geometric discrepancy: 0.1052

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.3

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OSA|1|18S|A|520
7OSA|1|18S|A|521
7OSA|1|18S|U|522
7OSA|1|18S|G|523
7OSA|1|18S|U|524
7OSA|1|18S|A|525
7OSA|1|18S|A|526
7OSA|1|18S|A|527
7OSA|1|18S|U|528
7OSA|1|18S|A|529
7OSA|1|18S|C|530
7OSA|1|18S|C|531
7OSA|1|18S|U|532

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS24

40S ribosomal protein S24

Chain eS4

40S ribosomal protein S4

Chain uS4

BJ4_G0026100.mRNA.1.CDS.1