HL_7OSA_027

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7OSA|1|18S|G|1243, 7OSA|1|18S|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSA_027 not in the Motif Atlas

Geometric match to HL_4V88_213

Geometric discrepancy: 0.3082

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7OSA|1|18S|A|1238
7OSA|1|18S|U|1239
7OSA|1|18S|U|1240
7OSA|1|18S|G|1241
7OSA|1|18S|A|1242
7OSA|1|18S|G|1243
7OSA|1|18S|A|1244
7OSA|1|18S|G|1245
7OSA|1|18S|C|1246
7OSA|1|18S|U|1247

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS31

Ubiquitin-40S ribosomal protein S31

Chain uS14

HLJ1_G0030400.mRNA.1.CDS.1

Chain uS19

40S ribosomal protein S15