HL_7OSA_063

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

7OSA|1|25S|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSA_063 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3748

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7OSA|1|25S|C|1238
7OSA|1|25S|C|1239
7OSA|1|25S|A|1240
7OSA|1|25S|U|1241
7OSA|1|25S|G|1242
7OSA|1|25S|G|1243
7OSA|1|25S|A|1244
7OSA|1|25S|A|1245
7OSA|1|25S|G|1246
7OSA|1|25S|U|1247
7OSA|1|25S|C|1248
7OSA|1|25S|G|1249
7OSA|1|25S|G|1250

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain uL11

60S ribosomal protein L12-B