HL_7OSA_122
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OSA_122 not in the Motif Atlas
- Geometric match to HL_5TBW_230
- Geometric discrepancy: 0.0702
- The information below is about HL_5TBW_230
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7OSA|1|58S|C|47
7OSA|1|58S|A|48
7OSA|1|58S|G|49
7OSA|1|58S|C|50
7OSA|1|58S|G|51
7OSA|1|58S|A|52
7OSA|1|58S|A|53
7OSA|1|58S|A|54
7OSA|1|58S|U|55
7OSA|1|58S|G|56
Current chains
- Chain 58S
- 5.8S rRNA
Nearby chains
- Chain 25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain eL37
- Ribosomal protein L37
- Chain eL39
- 60S ribosomal protein L39
- Chain uL23
- 60S ribosomal protein L25
- Chain uL29
- BJ4_G0044250.mRNA.1.CDS.1
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