HL_7OSM_005

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

7OSM|1|18S|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_005 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1126

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7OSM|1|18S|G|243
7OSM|1|18S|A|244
7OSM|1|18S|U|245
7OSM|1|18S|G|246
7OSM|1|18S|A|247
7OSM|1|18S|U|248
7OSM|1|18S|U|249
7OSM|1|18S|C|250

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS4

40S ribosomal protein S4

Chain eS6

40S ribosomal protein S6

Chain uS17

40S ribosomal protein S11-B