HL_7OSM_007

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

7OSM|1|18S|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_007 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1202

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7OSM|1|18S|G|330
7OSM|1|18S|A|331
7OSM|1|18S|U|332
7OSM|1|18S|A|333
7OSM|1|18S|G|334
7OSM|1|18S|U|335
7OSM|1|18S|G|336
7OSM|1|18S|G|337
7OSM|1|18S|C|338

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS8

40S ribosomal protein S8

Chain uS17

40S ribosomal protein S11-B