HL_7OSM_027

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7OSM|1|18S|G|1243, 7OSM|1|18S|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_027 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3026

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7OSM|1|18S|A|1238
7OSM|1|18S|U|1239
7OSM|1|18S|U|1240
7OSM|1|18S|G|1241
7OSM|1|18S|A|1242
7OSM|1|18S|G|1243
7OSM|1|18S|A|1244
7OSM|1|18S|G|1245
7OSM|1|18S|C|1246
7OSM|1|18S|U|1247

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS31

Ubiquitin-40S ribosomal protein S31

Chain uS14

HLJ1_G0030400.mRNA.1.CDS.1

Chain uS19

40S ribosomal protein S15