3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
ACGUGCAAAU
Length
10 nucleotides
Bulged bases
7OSM|1|25S|U|879, 7OSM|1|25S|A|883
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OSM_056 not in the Motif Atlas
Homologous match to HL_5TBW_020
Geometric discrepancy: 0.0781
The information below is about HL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.8
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

7OSM|1|25S|A|876
7OSM|1|25S|C|877
7OSM|1|25S|G|878
7OSM|1|25S|U|879
7OSM|1|25S|G|880
7OSM|1|25S|C|881
7OSM|1|25S|A|882
7OSM|1|25S|A|883
7OSM|1|25S|A|884
7OSM|1|25S|U|885

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL37
Ribosomal protein L37
Chain uL22
BJ4_G0005750.mRNA.1.CDS.1
Chain uL3
60S ribosomal protein L3

Coloring options:


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