HL_7OSM_077

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

7OSM|1|25S|C|1846, 7OSM|1|25S|G|1848, 7OSM|1|25S|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_077 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.0692

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7OSM|1|25S|C|1844
7OSM|1|25S|G|1845
7OSM|1|25S|C|1846
7OSM|1|25S|A|1847
7OSM|1|25S|G|1848
7OSM|1|25S|C|1849
7OSM|1|25S|A|1850
7OSM|1|25S|G|1851

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL37

Ribosomal protein L37

Chain eL39

60S ribosomal protein L39

Chain uL22

BJ4_G0005750.mRNA.1.CDS.1

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1