HL_7OSM_099

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7OSM|1|25S|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_099 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1015

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7OSM|1|25S|A|2897
7OSM|1|25S|G|2898
7OSM|1|25S|C|2899
7OSM|1|25S|A|2900
7OSM|1|25S|G|2901
7OSM|1|25S|A|2902
7OSM|1|25S|A|2903
7OSM|1|25S|U|2904

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain eL40

Ubiquitin

Chain uL6

60S ribosomal protein L9-A