HL_7OW7_022

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7OW7|1|A|U|1596, 7OW7|1|A|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OW7_022 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1005

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7OW7|1|A|A|1593
7OW7|1|A|C|1594
7OW7|1|A|G|1595
7OW7|1|A|U|1596
7OW7|1|A|G|1597
7OW7|1|A|C|1598
7OW7|1|A|A|1599
7OW7|1|A|A|1600
7OW7|1|A|A|1601
7OW7|1|A|U|1602

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3 isoform a

Chain J

60S ribosomal protein L17

Chain d

60S ribosomal protein L37