HL_7OYD_014

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUCC

Length

4 nucleotides

Bulged bases

7OYD|1|5|U|1183, 7OYD|1|5|C|1184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_014 not in the Motif Atlas

Geometric match to HL_8P9A_134

Geometric discrepancy: 0.3687

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7OYD|1|5|G|1182
7OYD|1|5|U|1183
7OYD|1|5|C|1184
7OYD|1|5|C|1187

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

60S ribosomal protein L10

Chain K

5S ribosomal RNA; 5S rRNA