HL_7OYD_019
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUCUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_019 not in the Motif Atlas
- Geometric match to HL_1ZCI_002
- Geometric discrepancy: 0.3623
- The information below is about HL_1ZCI_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_94376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7OYD|1|5|C|1441
7OYD|1|5|U|1442
7OYD|1|5|C|1443
7OYD|1|5|U|1444
7OYD|1|5|C|1445
7OYD|1|5|C|1446
7OYD|1|5|A|1447
7OYD|1|5|G|1448
7OYD|1|5|U|1449
7OYD|1|5|C|1450
7OYD|1|5|C|1451
7OYD|1|5|G|1452
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain F
- uL30
- Chain Q
- RPL18
- Chain b
- 60S ribosomal protein L29
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