HL_7OYD_022
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACGUGCGAAU
- Length
- 10 nucleotides
- Bulged bases
- 7OYD|1|5|U|1600, 7OYD|1|5|A|1604
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_022 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.0874
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|A|1597
7OYD|1|5|C|1598
7OYD|1|5|G|1599
7OYD|1|5|U|1600
7OYD|1|5|G|1601
7OYD|1|5|C|1602
7OYD|1|5|G|1603
7OYD|1|5|A|1604
7OYD|1|5|A|1605
7OYD|1|5|U|1606
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain P
- 60S ribosomal protein L17
- Chain j
- Ribosomal protein L37
- Chain s1
- Dap1b
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