HL_7OYD_023

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7OYD|1|5|A|1634, 7OYD|1|5|G|1637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_023 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1212

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OYD|1|5|G|1631
7OYD|1|5|C|1632
7OYD|1|5|G|1633
7OYD|1|5|A|1634
7OYD|1|5|A|1635
7OYD|1|5|A|1636
7OYD|1|5|G|1637
7OYD|1|5|A|1638
7OYD|1|5|C|1639

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37