HL_7OYD_030

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_030 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3222

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7OYD|1|5|U|2010
7OYD|1|5|G|2011
7OYD|1|5|U|2012
7OYD|1|5|A|2013
7OYD|1|5|A|2014
7OYD|1|5|C|2015
7OYD|1|5|A|2016
7OYD|1|5|A|2017

Current chains

Chain 5

28S rRNA

Nearby chains

Chain m

RPL40

Chain s

RPLP0

Chain v

EEF2