HL_7OYD_047

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

7OYD|1|5|A|3646, 7OYD|1|5|A|3647, 7OYD|1|5|U|3648, 7OYD|1|5|A|3652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_047 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1736

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7OYD|1|5|U|3643
7OYD|1|5|U|3644
7OYD|1|5|U|3645
7OYD|1|5|A|3646
7OYD|1|5|A|3647
7OYD|1|5|U|3648
7OYD|1|5|U|3649
7OYD|1|5|A|3650
7OYD|1|5|A|3651
7OYD|1|5|A|3652
7OYD|1|5|A|3653

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain j

Ribosomal protein L37

Chain s1

Dap1b