HL_7OYD_051

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7OYD|1|5|U|3806

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OYD_051 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0886

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7OYD|1|5|U|3800
7OYD|1|5|C|3801
7OYD|1|5|U|3802
7OYD|1|5|A|3803
7OYD|1|5|A|3804
7OYD|1|5|U|3805
7OYD|1|5|U|3806
7OYD|1|5|A|3807
7OYD|1|5|G|3808

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain V

Ribosomal protein L23