HL_7OYD_055
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UCAAACGGUA(6MZ)CG
- Length
- 13 nucleotides
- Bulged bases
- 7OYD|1|5|A|4218, 7OYD|1|5|C|4225
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OYD_055 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.1195
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
7OYD|1|5|U|4214
7OYD|1|5|C|4215
7OYD|1|5|A|4216
7OYD|1|5|A|4217
7OYD|1|5|A|4218
7OYD|1|5|C|4219
7OYD|1|5|G|4220
7OYD|1|5|G|4221
7OYD|1|5|U|4222
7OYD|1|5|A|4223
7OYD|1|5|6MZ|4224
7OYD|1|5|C|4225
7OYD|1|5|G|4226
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
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